Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PCPG | rs6085353 | chr20:6004545 | C/T | 0 | 177 | 25.53 | 23.53 | 2.93 | KM Plot |
| PCPG | rs6085354 | chr20:6007016 | A/G | 0 | 177 | 25.67 | 22.63 | 2.93 | KM Plot |
| PCPG | rs6085357 | chr20:6025455 | C/T | 0 | 177 | 25.47 | 23.08 | 2.93 | KM Plot |
| PCPG | rs6085358 | chr20:6025585 | A/G | 0 | 177 | 25.47 | 23.08 | 2.93 | KM Plot |
| PCPG | rs6085359 | chr20:6027680 | G/A | 0 | 177 | 25.47 | 23.08 | 2.93 | KM Plot |
| PCPG | rs6085360 | chr20:6027725 | A/G | 0 | 177 | 25.47 | 23.08 | 2.93 | KM Plot |
| PCPG | rs6085361 | chr20:6028161 | G/A | 0 | 177 | 25.47 | 23.08 | 2.93 | KM Plot |
| PCPG | rs6085362 | chr20:6028239 | C/T | 0 | 178 | 25.47 | 23.53 | 2.93 | KM Plot |
| PCPG | rs6085363 | chr20:6028307 | T/C | 0 | 178 | 25.47 | 23.53 | 2.93 | KM Plot |
| PCPG | rs6085364 | chr20:6029199 | C/T | 0 | 178 | 25.47 | 23.53 | 2.93 | KM Plot |
| PCPG | rs60862594 | chr16:89978338 | G/A | 0.000176 | 174 | 25.87 | 20.37 | 3.17 | KM Plot |
| PCPG | rs60889002 | chr3:39168308 | T/A | 7.83E-7 | 178 | 25.87 | 20.47 | 24.72 | KM Plot |
| PCPG | rs60913149 | chr12:56643684 | C/T | 9.68E-8 | 178 | 25.17 | 29.13 | 0.8 | KM Plot |
| PCPG | rs60931351 | chr15:56305541 | A/T | 0.00042 | 177 | 25 | 26.53 | 21.55 | KM Plot |
| PCPG | rs60997773 | chr16:89587287 | T/A | 0.000192 | 177 | 26.78 | 25.4 | 19.53 | KM Plot |